PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00017.20
Common NameJCGZ_25920, LOC105648274
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 297aa    MW: 32308.7 Da    PI: 4.7272
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00017.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431e-131874146
                     TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqk 46
                     +g W++eEd++l ++    G g            +W+ Ia++++ gRt++++k++w++
    Jcr4S00017.20 18 KGLWSPEEDDKLMNYMINNGQGcwsdvarnaglqRWSQIAARLP-GRTDNEIKNFWNS 74
                     678*****************************************.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5591380IPR017930Myb domain
SuperFamilySSF466895.45E-121482IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-91648IPR009057Homeodomain-like
SMARTSM007174.0E-101778IPR001005SANT/Myb domain
PfamPF002494.6E-121874IPR001005SANT/Myb domain
CDDcd001674.46E-92173No hitNo description
Gene3DG3DSA:1.10.10.607.0E-124977IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MRKPEASGKN NNNNKLRKGL WSPEEDDKLM NYMINNGQGC WSDVARNAGL QRWSQIAARL  60
PGRTDNEIKN FWNSTIKKRL KNLSSTASPN TSDSSSEPSK EAATMGGGVG VGGFMMISMQ  120
EQGMNPMYLD PSLSSSSSSL SSTSTSMQAM FMNHHPMMDS LPNIDNGLSI YGASVFFNNA  180
PACTTQIGVN GEDLYGNQGI FGSVNIGIEG DLHVPPLEST SIEENTKIDN MYGNKYQHGN  240
VNRIGSNCNN SNNNGNNAEN FGAGIGNLWQ GDLKVGEWDL EELMKDVSSF PFLDFSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346620.0KM034662.1 Jatropha curcas clone JcMYB042 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012089996.11e-177PREDICTED: transcription factor MYB46
TrEMBLA0A067JRD51e-177A0A067JRD5_JATCU; MYB family protein
STRINGGLYMA11G14200.23e-86(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.13e-32myb domain protein 46
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]